PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g25160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 373aa    MW: 41613.2 Da    PI: 8.5466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g25160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.8e-06135158123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y+C+ Cg++F ++ +L++H++  H
  CA06g25160 135 YPCTLCGEVFQSPIHLEQHQSIkH 158
                 99******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.076135159IPR007087Zinc finger, C2H2
SMARTSM003550.0026135158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137158IPR007087Zinc finger, C2H2
SuperFamilySSF563998.15E-15160371No hitNo description
Gene3DG3DSA:3.90.228.102.0E-6161276IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.105.8E-5307371IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MANTFFRPSF SSFFSTLFLL LHLGCFITSS SRKRKLSSQS HHDSPPPSSS RLKLSTTNPF  60
STSWSYIRRI FSSNKPNYPL QKANKPSSIP SPSSSTRSLQ KPISANDPIA HSVTPTPEAE  120
ITSDQLFLPL RNDIYPCTLC GEVFQSPIHL EQHQSIKHAI SELTDGDSGN NIVRIIFQTG  180
WPDKAAKNPN IRRILKIHNS KRILTRFEEY RESVKLKASR NAVVKRDERC AADGNELLRF  240
HCSTFMCELG QNGHSSICTQ QYCSVCGIIK SGFSHKMDGI SMQPTSWRGH VSVPEDIEEE  300
FGFMNVKRAM LVCRVIAGRV GCDPGYVDKE DSGYDSLVGS GNGVHTRLDE EDELLVFNSR  360
AVLPCFVIVY TV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577709.10.0PREDICTED: uncharacterized protein LOC107875487
TrEMBLA0A0V0HZJ00.0A0A0V0HZJ0_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000780310.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-103C2H2 family protein